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CityGML. This is the standard format with most options. CityGML also contains expired/historic objects. More information: Geography Markup Language (GML) | Geonovum
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GMLLight. It is a lighter and simplified GML-format with less options. It contains expired/historic objects. It uses more BGT specific attributes.
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StUF-Geo. This format contains the BGT data using the StUF-Geo format. It doesn’t contain expired/historic objects. It is used in exchange between different systems. More information: Berichtencatalogus StUF-Geo IMGeo versie 1.3 | Geonovum
Including ‘plaatsbepalingspunten’ is an extra option. You can choose if you want them in your data or not. It has nothing to do with the format you want to use.